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dc.contributor.authorCorominas, Jordi
dc.contributor.authorRamayo Caldas, Yuliaxis
dc.contributor.authorPuig Oliveras, Anna
dc.contributor.authorEstellé, Jordi
dc.contributor.authorCastelló, Anna
dc.contributor.authorAlves, Estefania
dc.contributor.authorPena i Subirà, Ramona Natacha
dc.contributor.authorBallester, Maria
dc.contributor.authorFolch Albareda, Josep Maria
dc.date.accessioned2017-07-10T09:07:11Z
dc.date.available2017-07-10T09:07:11Z
dc.date.issued2013
dc.identifier.issn1471-2458
dc.identifier.urihttp://hdl.handle.net/10459.1/60019
dc.description.abstractBackground: In pigs, adipose tissue is one of the principal organs involved in the regulation of lipid metabolism. It is particularly involved in the overall fatty acid synthesis with consequences in other lipid-target organs such as muscles and the liver. With this in mind, we have used massive, parallel high-throughput sequencing technologies to characterize the porcine adipose tissue transcriptome architecture in six Iberian x Landrace crossbred pigs showing extreme phenotypes for intramuscular fatty acid composition (three per group). Results: High-throughput RNA sequencing was used to generate a whole characterization of adipose tissue (backfat) transcriptome. A total of 4,130 putative unannotated protein-coding sequences were identified in the 20% of reads which mapped in intergenic regions. Furthermore, 36% of the unmapped reads were represented by interspersed repeats, SINEs being the most abundant elements. Differential expression analyses identified 396 candidate genes among divergent animals for intramuscular fatty acid composition. Sixty-two percent of these genes (247/396) presented higher expression in the group of pigs with higher content of intramuscular SFA and MUFA, while the remaining 149 showed higher expression in the group with higher content of PUFA. Pathway analysis related these genes to biological functions and canonical pathways controlling lipid and fatty acid metabolisms. In concordance with the phenotypic classification of animals, the major metabolic pathway differentially modulated between groups was de novo lipogenesis, the group with more PUFA being the one that showed lower expression of lipogenic genes. Conclusions: These results will help in the identification of genetic variants at loci that affect fatty acid composition traits. The implications of these results range from the improvement of porcine meat quality traits to the application of the pig as an animal model of human metabolic diseases.ca_ES
dc.description.sponsorshipThis work was funded by the Ministerio de Economía y Competitividad Project AGL2011-29821-C02, and by the Innovation Consolider-Ingenio 2010 Program (CSD2007-00036, Centre for Research in Agrigenomics). J. Corominas was funded by a FPI PhD grant from the Spanish Ministerio de Educación (BES-2009- 081223), Y. Ramayo-Caldas was funded by a FPU PhD grant from the Spanish Ministerio de Educación (AP2008-01450) and A. Puig-Oliveras was funded by a PIF PhD grant from the Universitat Autónoma de Barcelona (458-01-1/2011).ca_ES
dc.language.isoengca_ES
dc.publisherBioMed Centralca_ES
dc.relationMICINN/PN2008-2011/AGL2011-29821-C02
dc.relation.isformatofReproducció del document publicat a https://doi.org/10.1186/1471-2164-14-843ca_ES
dc.relation.ispartofBioMed Central Genomics, 2013, vol. 14, núm. 843, p. 1-14ca_ES
dc.rightscc-by (c) Corominas et al., 2013ca_ES
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/*
dc.subjectRNA-Seqca_ES
dc.subjectTranscriptomeca_ES
dc.subjectAdipose tissueca_ES
dc.subjectPorkca_ES
dc.subjectde novo lipogenesisca_ES
dc.titleAnalysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid compositionca_ES
dc.typearticleca_ES
dc.identifier.idgrec020360
dc.type.versionpublishedVersionca_ES
dc.rights.accessRightsinfo:eu-repo/semantics/openAccessca_ES
dc.identifier.doihttps://doi.org/10.1186/1471-2164-14-843


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cc-by (c) Corominas et al., 2013
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