Now showing items 1-6 of 6

    • Biblio-MetReS for user-friendly mining of genes and biological processes in scientific documents 

      Usié Chimenos, Anabel; Karathia, Hiren; Teixidó Torrelles, Ivan; Alves, Rui; Solsona Tehàs, Francesc (PeerJ, 2014)
      One way to initiate the reconstruction of molecular circuits is by using automated text-mining techniques. Developing more efficient methods for such reconstruction is a topic of active research, and those methods are ...
    • Biblio-MetReS: A bibliometric network reconstruction application and server 

      Usié Chimenos, Anabel; Karathia, Hiren; Teixidó Torrelles, Ivan; Valls Marsal, Joan; Faus i Torà, Xavier; Alves, Rui; Solsona Tehàs, Francesc (BioMed Central, 2011)
      Background: Reconstruction of genes and/or protein networks from automated analysis of the literature is one of the current targets of text mining in biomedical research. Some user-friendly tools already perform this ...
    • Database constraints applied to metabolic pathway reconstruction tools 

      Vilaplana Mayoral, Jordi; Solsona Tehàs, Francesc; Teixidó Torrelles, Ivan; Usié Chimenos, Anabel; Karathia, Hiren; Alves, Rui; Mateo Fornés, Jordi (Hindawi Publishing Corporation, 2014)
      Our group developed two biological applications, Biblio-MetReS and Homol-MetReS, accessing the same database of organisms with annotated genes. Biblio-MetReS is a data-mining application that facilitates the reconstruction ...
    • Methods for and results from the study of design principles in molecular systems 

      Salvadó López, Baldiri; Karathia, Hiren; Usié Chimenos, Anabel; Vilaprinyo Terré, Ester; Omholt, Stig; Sorribas Tello, Albert; Alves, Rui (Elsevier, 2011)
      Most aspects of molecular biology can be understood in terms of biological design principles. These principles can be loosely defined as qualitative and quantitative features that emerge in evolution and recur more ...
    • Saccharomyces cerevisiae as a model organism: a comparative study 

      Karathia, Hiren; Vilaprinyo Terré, Ester; Sorribas Tello, Albert; Alves, Rui (Public Library of Science (PLoS), 2011)
      Background: Model organisms are used for research because they provide a framework on which to develop and optimize methods that facilitate and standardize analysis. Such organisms should be representative of the living ...
    • Two component systems: physiological effect of a third component 

      Salvadó López, Baldiri; Vilaprinyo Terré, Ester; Karathia, Hiren; Sorribas Tello, Albert; Alves, Rui (Public Library of Science, 2012)
      Signal transduction systems mediate the response and adaptation of organisms to environmental changes. In prokaryotes, this signal transduction is often done through Two Component Systems (TCS). These TCS are phosphotransfer ...