Now showing items 1-5 of 5

    • Biblio-MetReS for user-friendly mining of genes and biological processes in scientific documents 

      Usié Chimenos, Anabel; Karathia, Hiren; Teixidó Torrelles, Ivan; Alves, Rui; Solsona Tehàs, Francesc (PeerJ, 2014)
      One way to initiate the reconstruction of molecular circuits is by using automated text-mining techniques. Developing more efficient methods for such reconstruction is a topic of active research, and those methods are ...
    • Biblio-MetReS: A bibliometric network reconstruction application and server 

      Usié Chimenos, Anabel; Karathia, Hiren; Teixidó Torrelles, Ivan; Valls Marsal, Joan; Faus i Torà, Xavier; Alves, Rui; Solsona Tehàs, Francesc (BioMed Central, 2011)
      Background: Reconstruction of genes and/or protein networks from automated analysis of the literature is one of the current targets of text mining in biomedical research. Some user-friendly tools already perform this ...
    • CheNER: a tool for the identification of chemical entities and their classes in biomedical literature 

      Solsona Tehàs, Francesc; Alves, Rui; Usié Chimenos, Anabel; Cruz, Joaquim; Comas, Jorge (BioMed Central, 2015)
      Background: Small chemical molecules regulate biological processes at the molecular level. Those molecules are often involved in causing or treating pathological states. Automatically identifying such molecules in biomedical ...
    • CheNER: Chemical Named Entity Recognizer 

      Usié Chimenos, Anabel; Alves, Rui; Solsona Tehàs, Francesc; Vázquez, Miguel; Valéncia, Alfonso (Oxford University Press, 2013)
      Motivation: Chemical named entity recognition is used to automatically identify mentions to chemical compounds in text, and is the basis for more elaborate information extraction. However, only a small number of ...
    • Database constraints applied to metabolic pathway reconstruction tools 

      Vilaplana Mayoral, Jordi; Solsona Tehàs, Francesc; Teixidó Torrelles, Ivan; Usié Chimenos, Anabel; Karathia, Hiren; Alves, Rui; Mateo Fornés, Jordi (Hindawi Publishing Corporation, 2014)
      Our group developed two biological applications, Biblio-MetReS and Homol-MetReS, accessing the same database of organisms with annotated genes. Biblio-MetReS is a data-mining application that facilitates the reconstruction ...