Now showing items 1-4 of 4

    • Exploiting parallelism on progressive alignment methods 

      Orobitg Cortada, Miquel; Guirado Fernández, Fernando; Notredame, Cedric; Cores Prado, Fernando (Springer Verlag, 2011)
      Multiple Sequence Alignment (MSA) constitutes an extremely powerful tool for important biological applications such as phylogenetic analysis, identification of conserved motifs and domains and structure prediction. In ...
    • High Performance computing improvements on bioinformatics consistency-based multiple sequence alignment tools 

      Orobitg Cortada, Miquel; Guirado Fernández, Fernando; Cores Prado, Fernando; Lladós Segura, Jordi; Notredame, Cedric (Elsevier, 2014-10-08)
      Multiple Sequence Alignment (MSA) is essential for a wide range of applications in Bioinformatics. Traditionally, the alignment accuracy was the main metric used to evaluate the goodness of MSA tools. However, with the ...
    • Recovering accuracy methods for scalable consistency library 

      Lladós Segura, Jordi; Guirado Fernández, Fernando; Cores Prado, Fernando; Lérida Monsó, Josep Lluís; Notredame, Cedric (Springer Verlag, 2015-05-01)
      Multiple sequence alignment (MSA) is crucial for high-throughput next generation sequencing applications. Large-scale alignments with thousands of sequences are necessary for these applications. However, the quality of the ...
    • T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension 

      Di Tommaso, Paolo; Moretti, Sebastien; Xenarios, Ioannis; Orobitg Cortada, Miquel; Montañola Lacort, Alberto (Oxford University Press, 2011)
      This article introduces a new interface for T-Coffee, a consistency-based multiple sequence alignment program. This interface provides an easy and intuitive access to the most popular functionality of the package. These ...